The following diagram represents the extracted cavities in abstract graphical representation. Each circular node denotes a cavity in the protein. The top row shows cavities extracted using traditional alpha-complex based approach, while bottom row shows robust cavities extracted after filtration modification. The lines connecting the nodes denote the mapping between these sets of cavities. Multiple cavities which are close in proximity can merge after filtration modification to form single robust cavity.

In single cavity mode, this diagram becomes interactive. A node in this diagram can be selected to view the corresponding cavity in JMol plugin along with its properties. Clicking the selected node unselects that node. Note: If single cavity mode is turned off, then nodes can't be selected from this diagram. In that mode, the properties table should be used to highlight a cavity in JMol.