Please cite the paper ChExVis: a tool for molecular channel extraction and visualization if you are using results from this server.
Parameters used:
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 5
* Transmembrane Classification: TMHMM (Dataset not available on OPM database)
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 5
* Transmembrane Classification: TMHMM (Dataset not available on OPM database)
Comment: The functionally significant channel we were interested in was automatically found as the only trans-membrane pore by ChExVis with these parameters. Without using transmembrane classification data it is very hard to automatically detect required channel in this structure. This is because one of the end points of this channel is has very small opening.
How to view: Select the only row pore in "Trans-membrane Pores" table to view this pore.Click on any table row below to view the corresponding channel.
Trans-membrane Pores
| Rank | Out Pt | In Pt | Length | Bottle-neck | Straightness | Score |
|---|---|---|---|---|---|---|
| 1 | 5 | 1 | 76.367 | 1.916 | 0.992 | 0.997 |
| Show Molecule as: | ||
| Show Channel as: | Download PyMOL script for this channel | |
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Channel properties