Please cite the paper ChExVis: a tool for molecular channel extraction and visualization if you are using results from this server.
Parameters used:
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 1
* Transmembrane Classification: TMHMM
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 1
* Transmembrane Classification: TMHMM
Comment: The functionally significant channel we are interested in this structure was automatically found by extracting channels between top ranked boundary points inside and outside the membrane. Without using trans-membrane classification data, it is hard to find the same pore.
How to view: Select the only row pore in "Trans-membrane Pores" to view this pore.Click on any table row below to view the corresponding channel.
Trans-membrane Pores
| Rank | Out Pt | In Pt | Length | Bottle-neck | Straightness | Score |
|---|---|---|---|---|---|---|
| 1 | 1 | 1 | 67.391 | 3.380 | 0.967 | 0.989 |
| Show Molecule as: | ||
| Show Channel as: | Download PyMOL script for this channel | |
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Channel properties