Results for PDB structure: 1K4D (with probe radius: 0.00Å)
Parameters used:
* Auto End Points for pore computation: 14
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 5
* Transmembrane Classification: TMHMM (Dataset not available on OPM database)

Comment: The functionally significant channel we were interested in finding was found to be the fifth most important trans-membrane pore by ChExVis with the score of 0.835 in the set of 5 trans-membrane pores. However, this pore was the widest and striaghtest in the set. Low rank was due to its short length compared to other four pores.

Without using transmembrane classification data, the same channel was ranked 17th with score of 0.758 in the set of 91 pores between automatically selected 14 boundary points.

How to view: Select Rank 5 pore in "Trans-membrane Pores" table or Rank 17 pore in "Pores" table to view this pore.

Click on any table row below to view the corresponding channel.
Pores
RankPt 1Pt 2LengthBottle-neckStraightnessScore
178146.4781.7920.6690.822
269146.4821.7910.6690.822
313142.1311.6880.6830.801
424142.1271.6880.6830.801
547144.3011.6890.6210.786
636144.3051.6890.6210.786
719144.3081.6880.6210.786
828144.3031.6880.6210.786
946144.3021.6890.6060.781
1038144.3021.6890.6060.781
1117144.3051.6880.6060.781
1229144.3051.6880.6060.781
13914131.0611.7920.5960.762
14714131.0561.7920.5960.762
15814131.0561.7920.5960.762
16614131.0591.7910.5960.762
1751465.1261.8651.0000.758
18101491.7571.8650.7950.750
19121491.7581.8650.7950.750
20111491.7581.8650.7950.750
21131491.7601.8650.7950.750
22414128.8791.6890.6070.746
23314128.8841.6890.6070.746
24114128.8851.6880.6070.746
25214128.8821.6880.6070.746
26911107.1811.7920.6210.717
27710107.1791.7920.6210.717
28812107.1791.7920.6210.717
29613107.1811.7910.6210.716
30101267.8802.2480.6830.715
31111367.8802.2480.6830.715
321497.0181.5900.7040.691
331297.0201.5890.7040.691
342397.0191.5890.7040.691
353497.0181.5890.7040.691
3668122.9501.5900.4740.673
3767122.9491.5890.4740.673
3879122.9481.5890.4740.673
3989122.9451.5890.4740.673
40411105.0011.6890.5490.672
41310105.0041.6890.5490.672
42112105.0061.6880.5490.672
43213105.0041.6880.5490.672
44412105.0021.6890.5260.664
45311105.0041.6890.5260.664
46113105.0071.6880.5260.664
47210105.0051.6880.5260.664
4841055.2511.6890.8170.649
4931355.2491.6890.8170.649
5011155.2521.6880.8170.649
5121255.2531.6880.8170.649
5251232.8062.2480.7170.647
5351032.8082.2480.7170.647
5451132.8052.2480.7170.647
5551332.8062.2480.7170.647
56910107.1801.7920.3990.643
57713107.1791.7920.3990.643
58811107.1781.7920.3990.642
59612107.1801.7910.3990.642
605979.6541.7920.5670.636
615779.6521.7920.5670.636
625879.6511.7920.5670.636
635679.6541.7910.5670.636
64912107.1811.7920.3610.630
65711107.1781.7920.3610.630
66813107.1781.7920.3610.630
67610107.1801.7910.3610.630
68121367.8802.2480.3570.607
69101367.8802.2480.3570.607
70111267.8792.2480.3570.607
71101167.8792.2480.3570.607
7211040.5041.6160.8170.604
7321140.5051.6150.8170.604
7431240.5061.6150.8170.604
7541340.5041.6150.8170.604
764577.4751.6890.5060.595
773577.4771.6890.5060.595
781577.4801.6880.5060.595
792577.4781.6880.5060.595
801853.4561.5900.6150.562
812653.4561.5890.6150.562
823753.4571.5890.6150.562
834953.4541.5890.6150.562
844869.4911.7610.4080.555
852769.4921.7610.4080.555
863969.4911.7610.4080.555
871669.4931.7610.4080.555
8861140.9571.5600.4970.490
8991340.9551.5590.4970.490
9081040.9551.5590.4970.490
9171240.9551.5590.4970.490
Trans-membrane Pores
RankOut PtIn PtLengthBottle-neckStraightnessScore
141128.8791.6890.6070.837
231128.8841.6890.6070.837
311128.8851.6880.6070.837
421128.8821.6880.6070.837
55165.1261.8651.0000.835
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