ChExVis

Results for PDB structure: 3EAM (with probe radius: 0.00Å)

Parameters used:
* Auto End Points for pore computation: 7
* Inside Points for TM-pore computation: 1
* Outside Points for TM-pore computation: 1
* Transmembrane Classification: OPM

Comment: The functionally significant channel we are interested in this structure was automatically found by extracting channels between top ranked boundary points inside and outside the membrane.

Even without using transmembrane classification data, the same channel came out on the top with a very high score of 0.983 in the set of 21 pores between automatically selected 7 top boundary points.

How to view: Select Rank 1 pore in "Trans-membrane Pores" or "Pores" table to view this pore.

Click on any table row below to view the corresponding channel.
Pores

Rank	Pt 1	Pt 2	Length	Bottle-neck	Straightness	Score
1	1	7	82.820	4.444	1.000	0.983
2	3	7	86.905	2.600	0.758	0.780
3	5	7	87.157	2.502	0.755	0.773
4	6	7	86.552	2.468	0.754	0.768
5	2	7	84.197	2.475	0.759	0.761
6	4	7	86.845	2.376	0.746	0.759
7	5	6	84.807	2.234	0.693	0.723
8	3	6	84.267	2.214	0.697	0.721
9	3	4	84.253	2.165	0.705	0.719
10	2	5	84.887	2.156	0.697	0.719
11	2	4	84.591	2.156	0.697	0.718
12	1	3	49.868	2.214	0.848	0.640
13	1	5	50.470	2.252	0.831	0.639
14	1	6	50.184	2.234	0.835	0.638
15	1	2	50.201	2.156	0.846	0.636
16	1	4	50.174	2.165	0.836	0.633
17	4	5	83.043	2.165	0.293	0.578
18	2	6	83.816	2.156	0.285	0.577
19	2	3	84.285	2.156	0.280	0.577
20	3	5	72.103	2.214	0.401	0.575
21	4	6	84.470	2.165	0.263	0.573

Trans-membrane Pores

Rank	Out Pt	In Pt	Length	Bottle-neck	Straightness	Score
1	1	1	82.820	4.444	1.000	1.000

Channel view in JMol

Show Molecule as:		Show Widest Path Network
Show Channel as:		Download PyMOL script for this channel
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Channel properties