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RobustCavities Results
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Contents of this folder:
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1- <PDB-ID>.pdb		: The PDB file.
2- CavityMap.txt	: Provides mapping between original and robust cavities.
3- OrigCavities.txt	: Provides information about all the original cavities.
4- ModCavities.txt	: Provides information about all the robust cavities.
5- loadInPymol.py	: A python script which loads all the cavities in PyMOL.
6- README.txt		: This file.

Loading in PyMOL:
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+ Go to "File > Run..." menu item in PyMOL and select "loadInPymol.py" script 
from this folder.
+ The cavities will automatically be loaded in PyMOL. 
+ Original cavities would be hidden by default while all robust cavities will 
be shown.
+ Original cavities are given ids with prefix "orig_" while robust cavities have
ids with prefix "mod_".
+ Each cavity is shown as union of balls.
+ The cavities are given random colors, but a robust cavity is assigned the
color of the largest original cavity which constitutes it.

File Formats:
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CavityMap.txt: 
	-- First line specifies the total number of original cavities.
	-- Next lines are tab delimited tuples of the form:
	<orig_Cavity  mod_Cavity>

OrigCavities.txt (For original cavities):
ModCavities.txt  (For robust cavities)  :
	-- First line specifies the total number of cavities.
	-- Next lines are tab delimited tuples of the form:
	<cav_id persistence 0 vol 0 0 0 num_tets num_mouths surf_area rank_diff>

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Contact:

Talha Bin Masood 
(VGL, CSA, IISc)

Email: tbmasood@csa.iisc.ernet.in
